You have MRI data and want to extract structural and functional connectomes to simulate personalized brain network models? Us too! To make life easier we released the TVB Processing Pipeline inside a Docker container, along with other handy tools, on the HBP collab platform (HBP login required) and on dockerhub. The pipeline takes structural MRI, diffusion-weighted MRI and functional MRI as input and outputs a data set ready for brain simulation with The Virtual Brain. Watch this video for a quick overview on how to run the pipeline on HBP supercomputers and how to control them using Collab Jupyter notebooks.
Find this and our other tools, tutorials and documentationhere and on our GitHub page.